• SPSS

• SEQUEST

• GEXPAS

• Ingenuity IPA

• m2iRNA

• Mascot

• MATLAB

• ProteinPilot

• R/Bioconductor

• SAS

• GeneGo

• Gene Set Enrichment Analysis

• Cytoscape

• Partek Genomics Suite

• SYBYL 8.0

• JMP Genomics

• CLC Bio